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The linguistics of bacterial conflict systems reveal ancient origins of eukaryotic innate immunity

Anonymous — Thu, 19 Nov 2020 15:00:00 +0000

The linguistics of bacterial conflict systems reveal ancient origins of eukaryotic innate immunity Anonymous (not verified) Thu, 11/19/2020 - 08:00

Emily Kibby , Aaron Whiteley

J. Bacteriology 2020 Nov 19;202(24):e00507-20. doi: 10.1128/JB.00507-20. Online ahead of print.

Abstract

The arms-race between bacteria and their competitors has produced an astounding variety of conflict systems that are shared via horizontal gene transfer across bacterial populations. In this issue of Journal of Bacteriology, Burroughs and Aravind investigate how these biological conflict systems have been mixed-and-matched into new configurations, often with novel protein domains. The authors additionally characterize the evolutionary history of genes in eukaryotes that appear to have been acquired from these prokaryotic defense systems.

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Analysis of human cGAS activity and structure

Anonymous — Thu, 02 May 2019 06:00:00 +0000

Analysis of human cGAS activity and structure Anonymous (not verified) Thu, 05/02/2019 - 00:00

Zhou W , ➤Whiteley AT , Kranzusch PJ

Methods Enzymol. 2019;625:13-40. doi: 10.1016/bs.mie.2019.04.012. Epub 2019 May 2.

Abstract

Cyclic GMP-AMP synthase (cGAS) is an innate immune system enzyme responsible for recognition of double-stranded DNA aberrantly localized in the cell cytosol. cGAS binds DNA and is activated to catalyze production of the nucleotide second messenger 2'-5'/3'-5' cyclic GMP-AMP (2'3' cGAMP). In spite of a major role for cGAS in the cellular immune response, a complete understanding of cGAS biology has been limited by a lack of genetic tools to rapidly screen cGAS activity, instability of human cGAS-DNA interactions in vitro, and a previous absence of structural information for the human cGAS-DNA complex. Here we detail procedures to map the molecular determinants of cGAS activation and describe methods developed to prepare human cGAS-DNA crystals for structural analysis. Together with earlier systems established to study mammalian homologs of cGAS, these innovations provide a foundation to understand and therapeutically target human cGAS biology.

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Bacterial cGAS-like enzymes synthesize diverse nucleotide signals

Anonymous — Fri, 01 Mar 2019 07:00:00 +0000

Bacterial cGAS-like enzymes synthesize diverse nucleotide signals Anonymous (not verified) Fri, 03/01/2019 - 00:00

➤Whiteley AT , Eaglesham JB , de Oliveira Mann CC , Morehouse BR , Lowey B , Nieminen EA , Danilchanka O , King DS , Lee ASY , Mekalanos JJ* , Kranzusch PJ*

*co-corresponding authors

Nature. 2019 Mar;567(7747):194-199. doi: 10.1038/s41586-019-0953-5. Epub 2019 Feb 20.

Abstract

Cyclic dinucleotides (CDNs) have central roles in bacterial homeostasis and virulence by acting as nucleotide second messengers. Bacterial CDNs also elicit immune responses during infection when they are detected by pattern-recognition receptors in animal cells. Here we perform a systematic biochemical screen for bacterial signalling nucleotides and discover a large family of cGAS/DncV-like nucleotidyltransferases (CD-NTases) that use both purine and pyrimidine nucleotides to synthesize a diverse range of CDNs. A series of crystal structures establish CD-NTases as a structurally conserved family and reveal key contacts in the enzyme active-site lid that direct purine or pyrimidine selection. CD-NTase products are not restricted to CDNs and also include an unexpected class of cyclic trinucleotide compounds. Biochemical and cellular analyses of CD-NTase signalling nucleotides demonstrate that these cyclic di- and trinucleotides activate distinct host receptors and thus may modulate the interaction of both pathogens and commensal microbiota with their animal and plant hosts.

News and Commentaries

Pyrimidines and Cyclic Trinucleotides Join the Second Messenger Symphony. [Cell host & microbe 2019]
Diverse bacterial nucleotide signals. [Science Signaling 2019]
Highlighted and discussed in This Week In Microbiology Podcast Episode #206

Links

➤Whiteley AT, Eaglesham JB, de Oliveira Mann CC, Morehouse BR, Lowey B, Nieminen EA, Danilchanka O, King DS, Lee ASY, Mekalanos JJ*, Kranzusch PJ* | Nature. 2019

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Structure of the Human cGAS-DNA Complex Reveals Enhanced Control of Immune Surveillance

Anonymous — Thu, 12 Jul 2018 06:00:00 +0000

Structure of the Human cGAS-DNA Complex Reveals Enhanced Control of Immune Surveillance Anonymous (not verified) Thu, 07/12/2018 - 00:00

Zhou W* , ➤Whiteley AT* , de Oliveira Mann CC , Morehouse BR , Nowak RP , Fischer ES , Gray NS , Mekalanos JJ , Kranzusch PJ

*These authors contributed equally to this work

Cell. 2018 Jul 12;174(2):300-311.e11. doi: 10.1016/j.cell.2018.06.026.

Abstract

Cyclic GMP-AMP synthase (cGAS) recognition of cytosolic DNA is critical for immune responses to pathogen replication, cellular stress, and cancer. Existing structures of the mouse cGAS-DNA complex provide a model for enzyme activation but do not explain why human cGAS exhibits severely reduced levels of cyclic GMP-AMP (cGAMP) synthesis compared to other mammals. Here, we discover that enhanced DNA-length specificity restrains human cGAS activation. Using reconstitution of cGAMP signaling in bacteria, we mapped the determinant of human cGAS regulation to two amino acid substitutions in the DNA-binding surface. Human-specific substitutions are necessary and sufficient to direct preferential detection of long DNA. Crystal structures reveal why removal of human substitutions relaxes DNA-length specificity and explain how human-specific DNA interactions favor cGAS oligomerization. These results define how DNA-sensing in humans adapted for enhanced specificity and provide a model of the active human cGAS-DNA complex to enable structure-guided design of cGAS therapeutics.

Comment in

Human cGAS Has a Slightly Different Taste for dsDNA. [Immunity. 2018]

Links

Zhou W*, ➤Whiteley AT*, de Oliveira Mann CC, Morehouse BR, Nowak RP, Fischer ES, Gray NS, Mekalanos JJ, Kranzusch PJ. | Cell. 2018

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