Molecular, Cellular and Developmental Biology /asmagazine/ en Two CU 麻豆影院 scientists win prestigious honor /asmagazine/2025/03/27/two-cu-boulder-scientists-win-prestigious-honor <span>Two CU 麻豆影院 scientists win prestigious honor</span> <span><span>Clint Talbott</span></span> <span><time datetime="2025-03-27T08:00:00-06:00" title="Thursday, March 27, 2025 - 08:00">Thu, 03/27/2025 - 08:00</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/2025-03/science%20image2.jpg?h=080bc288&amp;itok=Vh7blX_d" width="1200" height="800" alt="AAAS header"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/46"> Kudos </a> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/428" hreflang="en">Physics</a> </div> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default"> <div class="ucb-article-text" itemprop="articleBody"> <div><h2><em><span>Ivan Smalyukh and Tom Blumenthal are named fellows of the American Association for the Advancement of Science&nbsp;</span></em></h2><p>Two 麻豆影院 professors have been named 2024 <a href="https://www.aaas.org/news/aaas-welcomes-471-scientists-and-engineers-honorary-fellows" rel="nofollow">fellows</a> of the American Association for the Advancement of Science (AAAS), the group announced today.</p> <div class="align-right image_style-medium_750px_50_display_size_"> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/2025-03/Smalyukh%20Blumenthal2.jpg?itok=jgL9jyM8" width="750" height="469" alt="Smalyukh and Blumenthal"> </div> <span class="media-image-caption"> <p class="small-text"><em>Ivan Smalyukh (left) and Tom Blumenthal</em></p> </span> </div> <p><a href="/physics/ivan-smalyukh" rel="nofollow">Ivan Smalyukh</a>, professor of <a href="/physics/" rel="nofollow">physics</a>, and <a href="/mcdb/tom-blumenthal" rel="nofollow">Thomas Blumenthal</a>, professor emeritus of <a href="/mcdb/" rel="nofollow">molecular, cellular and developmental biology (MCDB)</a>, are among the 471 scientists, engineers and innovators who have been recognized for scientifically and socially distinguished achievements by the world鈥檚 largest general scientific society and publisher of the <em>Science&nbsp;</em>family of journals.</p><p>This year鈥檚 class of fellows 鈥渋s the embodiment of scientific excellence and service to our communities,鈥 said Sudip S. Parikh, AAAS chief executive officer and executive publisher of the <em>Science</em> family of journals.</p><p>鈥淎t a time when the future of the scientific enterprise in the U.S. and around the world is uncertain, their work demonstrates the value of sustained investment in science and engineering.鈥</p><p>鈥淚 am pleased to see this well-deserved recognition of Professor Smalyukh and Professor Blumenthal. Their accomplishments highlight the remarkable scientific advances occurring at CU,鈥&nbsp;said Irene Blair, dean of natural sciences.</p><p>Smalyukh鈥檚 research encompasses different branches of soft-condensed-matter and optical physics, including chiral phenomena, knot theory, laser trapping and imaging techniques, molecular and colloidal self-assembly, fundamental properties of liquid crystals, polymers, organic and nano photovoltaics, nano-structured and other functional materials, as well as their photonic and electro-optic applications.</p><p>鈥淲e aspire to uncover very fundamental physical principles underpinning phenomena and properties of materials and other physical systems,鈥 Smalyukh noted. 鈥淎t the same time, we also apply this fundamental knowledge to contribute to a sustainable future via designing artificial forms of meta matter needed to reduce the growing energy demand and slow down climate change.鈥</p><p>Smalyukh earned BS and MS degrees with highest honors in 1994 and 1995 from Lviv Polytechnic National University in Ukraine. He earned a PhD in chemical physics in 2003 from Kent State University in Ohio.</p><p>He joined the CU 麻豆影院 faculty in 2007. In addition to serving as a professor of physics, he holds a courtesy appointment as a professor in the Department of Electrical, Computer and Energy Engineering, is a fellow in the Materials Science Engineering Program and is a fellow of the Renewable &amp; Sustainable Energy Institute (RASEI), a joint institute of NREL and CU 麻豆影院.</p><p>Among other awards, Smalyukh has been named a fellow of the American Physical Society and has won the Department of Energy Early Career Research Award and a National Science Foundation CAREER Award.</p><p>Smalyukh said he is honored by the selection: 鈥淚 am especially grateful to many students and postdocs doing interdisciplinary physics-centered research together with me over nearly 20 years at CU 麻豆影院.鈥</p><p>Blumenthal鈥檚 lab has studied a variety of important problems in molecular biology, including regulation of gene expression, mechanisms of RNA splicing and arrangement of genes on chromosomes. His lab is responsible for discovering that eukaryotes can have operons for identifying the protein that is responsible for recognizing the 3鈥 splice site and for a variety of other esoteric findings.</p><p>He has also studied how the tiny extra chromosome responsible for Down syndrome changes the levels of many proteins, even though most of those proteins are not encoded on the extra chromosome.</p><p>Blumenthal earned a BA&nbsp;in biology from Antioch College&nbsp;in 1966 and a PhD&nbsp;in genetics from Johns Hopkins University&nbsp;in 1970. He did postdoctoral research at Harvard University from 1970-73, then spent 23 years at the Biology Department at Indiana University Bloomington and nine years at the University of Colorado School of Medicine. He joined CU 麻豆影院鈥檚 faculty in 2006 and served as professor and chair of MCDB.</p><p>Among other awards, Blumenthal was recognized as a fellow by the American Academy of Arts and Sciences in 2010 and won a fellowship from the John Simon Guggenheim Memorial Foundation in 1980.</p><p>Lee Niswander, professor and chair of molecular, cellular and developmental biology, said the department is thrilled about Blumenthal鈥檚 recognition. 鈥淭om鈥檚 research program related to RNA processing and gene regulation, as well as his strong leadership of MCDB, have left an enduring mark on science and MCDB.</p><p>鈥淭om continues to engage with astute questions and the endowment of a lecture series related to RNA biology through a partnership between CU 麻豆影院 and CU Anschutz.鈥</p><p>Counting Blumenthal and Smalyukh, 81 CU 麻豆影院 professors have been named AAAS fellows since 1981.&nbsp;</p></div> </div> </div> </div> </div> <div>Ivan Smalyukh and Tom Blumenthal are named fellows of the American Association for the Advancement of Science. </div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/2025-03/science%20image2.jpg?itok=OdcmS9jq" width="1500" height="618" alt="AAAS header"> </div> </div> <div>On</div> <div>White</div> Thu, 27 Mar 2025 14:00:00 +0000 Clint Talbott 6091 at /asmagazine Partnering with bots for better learning /asmagazine/2024/11/25/partnering-bots-better-learning <span>Partnering with bots for better learning</span> <span><span>Rachel Sauer</span></span> <span><time datetime="2024-11-25T07:30:00-07:00" title="Monday, November 25, 2024 - 07:30">Mon, 11/25/2024 - 07:30</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/2024-11/AI%20bots%20thumbnail.jpg?h=119335f7&amp;itok=-gjzgkBH" width="1200" height="800" alt="hand pointing at laptop keyboard with AI images floating above it"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> <a href="/asmagazine/taxonomy/term/1102" hreflang="en">Undergraduate Students</a> </div> <span>Cody DeBos</span> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead">CU 麻豆影院 Professor Mike Klymkowsky uses AI tools to help students develop critical-thinking skills</p><hr><p>For many, the idea of artificial intelligence (AI) taking on an expanded role in academia stirs uneasy feelings. Visions of computer-generated tutors and students 鈥渨riting鈥 essays using a chatbot paint a cold, impersonal destiny for education. However, <a href="/mcdb/mike-klymkowsky" rel="nofollow">Mike Klymkowsky</a>, a professor of <a href="/mcdb/" rel="nofollow">molecular, cellular and developmental biology</a> at the 麻豆影院, pictures a different future.</p><p>鈥淚t鈥檚 a tool that students will need to master, but its role will be largely determined by how the institution sets standards,鈥 Klymkowsky says.</p><div class="feature-layout-callout feature-layout-callout-medium"><div class="ucb-callout-content"> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/2024-12/Mike%20Klymkowski%20bopok.jpg?itok=E-KtFRsn" width="1500" height="1822" alt="Mike Klymkowsky reading children's book"> </div> <p>Mike Klymkowsky, a CU 麻豆影院 professor of molecular, cellular and developmental biology, is using AI tools in the classroom to help students grow critical thinking skills.</p></div></div><p>Klymkowsky, a veteran educator and innovator, is experimenting with AI not to provide answers to students, but to prompt intelligent questions and facilitate more effective learning. Through self-made AI assessment tools and interactive, personified tutor bots, he encourages students to shift their mindset from memorizing facts to becoming active champions of critical thinking.</p><p>Ultimately, Klymkowsky says, the aim of education is to foster skills that extend far beyond the classroom.</p><p>鈥淭he goal isn鈥檛 just to remember the right answer,鈥 he says; 鈥渋t鈥檚 to understand why that answer makes sense and why the other answers don鈥檛.鈥</p><p><strong>Developing more meaningful feedback and assessment</strong></p><p>Klymkowsky argues that traditional grading methods, particularly multiple-choice exams, fail to measure true comprehension; they look only for memorization.</p><p>Fortunately, he says, AI tools offer a different solution.</p><p>鈥淲hen ChatGPT came out, it became clear to me and everyone else in the universe that these were tools that allowed you to do things you鈥檇 always wanted to do,鈥 he explains.</p><p>By automating the analysis of students鈥 responses to open-ended prompts, AI can quickly highlight which concepts cause them to struggle and where instructors can spend more time. Such tasks involving quick analysis of vast datasets to identify patterns are where AI excels, Klymkowsky says.</p><p>鈥淣ow you can evaluate instructors on whether their learning goals are meaningful and whether the students are achieving them,鈥 Klymkowsky says.</p><p>His <a href="https://arxiv.org/abs/2406.07481" rel="nofollow">鈥淒ewey鈥 AI bot</a> can reduce days of manually combing through exam responses down to minutes, offering insights that allow him to target lectures more precisely and understand if learning outcomes are being reached.</p><p>Klymkowsky says this approach is key to helping students understand not just what they got wrong but why鈥攁nd how to improve.</p><p><strong>From cramming to critical thinking</strong></p><p>Klymkowsky鈥檚 approach to AI addresses a long-standing challenge in academia: the prevalence of rote memorization.</p><div class="feature-layout-callout feature-layout-callout-xlarge"><div class="ucb-callout-content"> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/2024-11/multiple%20choice%20test%20sheet.jpg?itok=ZzrOIfKn" width="1500" height="1000" alt="hand holding blue pen, filling in multiple choice sheet"> </div> <p>鈥淲henever a class starts using multiple-choice questions to answer, forget critical thinking. You鈥檙e not asking them how they got the answer; you鈥檙e asking them whether they recognize it,鈥 says Mike Klymkowsky.&nbsp;</p></div></div><p>鈥淲henever a class starts using multiple-choice questions to answer, forget critical thinking,鈥 he explains. 鈥淵ou鈥檙e not asking them how they got the answer; you鈥檙e asking them whether they recognize it.鈥</p><p>Klymkowsky, an avid proponent of exploratory, inquiry-based learning, created an AI 鈥渢utor bot鈥 called 鈥淩ita鈥 to enhance his students鈥 learning. The bot uses a technology known as retrieval-generated augmentation and is trained on information provided by Klymkowsky, including lecture materials and textbooks. Limiting the bot鈥檚 knowledge to a select dataset prevents it from 鈥渉allucinating鈥濃攎aking up potentially incorrect or misleading answers to questions it doesn鈥檛 know.</p><p>鈥淥ur bots, when you ask them a question they don鈥檛 know, they say 鈥業 don鈥檛 know.鈥 If you ask ChatGPT or Claude a question, it鈥檒l answer whether it knows it or not,鈥 he says.</p><p>Klymkowsky views Rita as a patient guide capable of leading students through complex materials at their own pace.</p><p>鈥淭hese bots don鈥檛 just spit out answers,鈥 he says. 鈥淭hey respond based on what students already know and ask follow-up questions to deepen their understanding.鈥</p><p>He also explains that the bots can be tailored to specific disciplines with a custom knowledge base. Keeping the bots within their trained parameters ensures students can rely on them to deliver accurate information without straying into unfamiliar territory.</p><p>鈥淵ou want to have the bot be focused on what the learning outcomes of the department are,鈥 Klymkowsky says. 鈥淪o, if students are engaging with a bot in a biology course, that bot is designed to know what it knows and what it doesn鈥檛 know.鈥</p><p>Tutor bots like Rita use the Socratic teaching model to promote critical thinking. They work with students to challenge their assumptions and develop solid explanations for their reasoning.</p><p>鈥淚magine being able to practice asking questions with a bot that makes you feel appreciated because it never loses its patience, right? It鈥檚 never snarky,鈥 Klymkowsky says.</p><p>Rita won鈥檛 simply ask a student for the answer. In the form of a conversation, the bot asks for a reflection on why the student believes their answer is correct鈥攐r why it isn鈥檛鈥攖o help them grasp the underlying principles of a given topic.</p><p>鈥淭he goal is not to memorize facts, but to understand the why and how behind them,鈥 Klymkowsky says. 鈥淚t鈥檚 about cultivating the kind of thinking that lets students ask the right questions鈥攁nd teaches them how to start finding answers independently.鈥</p><p><strong>Engaging students beyond the classroom</strong></p><p>In addition to Socratic tutor bots, Klymkowsky is using Notebook LM to <a href="https://klymkowsky.github.io/klymkowskylab/CLUE+biofundamentals%20podcasts.html" rel="nofollow">explore AI-generated podcasts</a> as a novel tool to spark curiosity. As with Rita, he creates these podcasts using a limited dataset, such as a course textbook.</p><p>The AI tool then turns the input into a two-way conversation between virtual speakers. Despite the surreal experience of listening to an entirely non-human conversation, the format allows students to explore high-level information in a more accessible style through a medium many younger adults favor.</p><p>鈥淭he goal with these podcasts is to give students a jumping-off point鈥攕omething that piques their interest and motivates them to dig deeper,鈥 Klymkowsky explains.</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><blockquote><p class="lead"><span>鈥淭he goal is not to memorize facts, but to understand the why and how behind them. It鈥檚 about cultivating the kind of thinking that lets students ask the right questions鈥攁nd teaches them how to start finding answers independently.鈥</span></p></blockquote></div></div><p>Each podcast episode introduces a biology concept, immersing students through storytelling and examples.</p><p>While the application is promising, Klymkowsky knows producing such content is a tricky balancing act of depth and attention span: 鈥淲hat is the attention span of the student? How long are you going to keep them on task before you ask them to do something themselves?鈥</p><p>Despite this challenge, Klymkowsky believes AI podcasts can complement classroom learning by acting as conversation starters.</p><p>鈥淚t鈥檚 more about using the podcast to motivate students to go read the book or the chapter鈥攐r to ask questions that they wouldn鈥檛 otherwise consider,鈥 he says.</p><p>From there, students can bring their questions into class discussions or interact with a tutor bot to reinforce their learning.</p><p>By embracing AI tools like Socratic tutor bots and podcasts, Klymkowsky believes it鈥檚 possible to create an educational space where students can deepen their understanding through diverse content formats while cultivating a habit of lifelong learning that goes beyond a multiple-choice bubble.</p><p><strong>Fueling curiosity, one question at a time</strong></p><p>As technology continues to shape academia, Klymkowsky emphasizes that AI, when thoughtfully applied, needn鈥檛 be the villain. Instead, it can be a powerful catalyst for cultivating critical thinking.</p><p>鈥淚f you don鈥檛 understand a thing, can you ask an intelligent question?鈥 Klymkowsky says.</p><p>With AI as a partner, he says he believes students can learn to ask those questions, and that AI can be used to develop curiosity and intellectual resilience鈥攕kills that will serve students far longer than a perfectly memorized breakdown of the Krebs cycle.&nbsp;</p><hr><p><em>Did you enjoy this article?&nbsp;</em><a href="https://cu.tfaforms.net/73" rel="nofollow"><em>Subscribe to our newsletter.</em></a><em>&nbsp;Passionate about molecular, cellular and developmental biology?&nbsp;</em><a href="/mcdb/donate" rel="nofollow"><em>Show your support.</em></a></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>CU 麻豆影院 Professor Mike Klymkowsky uses AI tools to help students develop critical-thinking skills.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/2024-11/AI%20bots%20header.jpg?itok=5LNJ7qGP" width="1500" height="518" alt="hand pointing at laptop keyboard with AI images floating above it"> </div> </div> <div>On</div> <div>White</div> Mon, 25 Nov 2024 14:30:00 +0000 Rachel Sauer 6022 at /asmagazine Scientists help students vanquish research-experience Catch-22 /asmagazine/2024/06/05/scientists-help-students-vanquish-research-experience-catch-22 <span>Scientists help students vanquish research-experience Catch-22</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2024-06-05T16:13:25-06:00" title="Wednesday, June 5, 2024 - 16:13">Wed, 06/05/2024 - 16:13</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/laboratory_header.jpg?h=fe37cce2&amp;itok=es-kZw-z" width="1200" height="800" alt="people working in science laboratory"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> <a href="/asmagazine/taxonomy/term/1102" hreflang="en">Undergraduate Students</a> </div> <a href="/asmagazine/rachel-sauer">Rachel Sauer</a> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead"><em>In new publication, CU 麻豆影院 scientists detail how the SkillsCenter allows students to gain credentials in basic to advanced research skills</em></p><hr><p>It鈥檚 an unfortunate truth of higher education that students are not exempt from a classic Catch-22: You need research experience to gain research experience.</p><p>鈥淯ndergraduates participating in research is a key variable for enhancing their persistence in STEM professions,鈥 explains <a href="/outreach/scope/zack-hazlett" rel="nofollow">Zachary Hazlett</a>, a PhD candidate in the 麻豆影院 <a href="/mcdb/" rel="nofollow">Department of Molecular, Cellular and Developmental Biology</a>.&nbsp; 鈥淏ut to gain access to opportunities in research is not the most straightforward. For a lot of students, these things aren鈥檛 baked into their undergraduate degree plan.鈥</p><p>So, students seeking research-focused internships, jobs or higher education opportunities after graduation are often inconsistently prepared with the necessary skills and experience. Hence, the <a href="https://skillscenter.colorado.edu/index.html" rel="nofollow">SkillsCenter</a>.</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><div> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/zachary_hazlett.jpg?itok=R4YE3eJT" width="750" height="750" alt="Zachary Hazlett"> </div> <p>Zachary Hazlett, a PhD candidate in the 麻豆影院 Department of Molecular, Cellular and Developmental Biology, is a lead TA on the SkillsCenter proctor team and first author on a paper newly publish in <em>Cell</em> detailing the organizing philosophy, structure and goals&nbsp;of SkillsCenter.</p></div></div></div><p>As detailed in <a href="https://www.cell.com/cell/fulltext/S0092-8674(24)00412-4" rel="nofollow">a paper newly published</a>&nbsp;in the journal <em>Cell</em>, the SkillsCenter is a modular research skills training course that allows students to 鈥済ain training and micro-credentials in the laboratory skills of their choosing.鈥</p><p>In other words, Hazlett says, 鈥渨hat if there was a bridge, something between the classroom and these research spaces that can allow students to gain that necessary experience? That can help equip them to enter those spaces both confidently and competently?鈥</p><p><strong>Module-based curriculum</strong></p><p>The SkillsCenter, which is open to students of every major, emerged, in part, from a recognition that undergraduate students have often gained research experiences 鈥渂y cold-calling faculty members and saying, 鈥業鈥檇 like to work in research, are there any opportunities in your lab?鈥欌 Hazlett says.</p><p>Understandably, faculty often ask what their previous experience is, and if a student doesn鈥檛 have any, they have to hope they鈥檒l get lucky and find a faculty member willing to teach them.</p><p>So, faculty and graduate students in the Department of Molecular, Cellular and Developmental Biology, led by Professor <a href="/mcdb/michael-stowell" rel="nofollow">Michael Stowell</a>, began researching and discussing alternative means by which undergraduate students could gain the training and experience they need to gain these critical professional development opportunities.</p><p>Based on the principle of 鈥渓earning by doing,鈥 they designed a <a href="https://skillscenter.colorado.edu/module.html" rel="nofollow">module-based curriculum</a> in which modules are scaled by skill level, with appropriate prerequisites, and students can learn at their own self-directed pace. In fall 2021, the first 10 students enrolled in the for-credit SkillsCenter course, working through skills such as lab safety, pipette operation and calibration, centrifugation, buffers and stocks preparation, autoclave sterilization and more.</p><p>Today, the course offers training in the laboratory basics as well as advanced training techniques such as polymerase chain reaction, protein expression and purification and various forms of microscopy.</p><p>鈥淭he course has been designed very carefully,鈥 Hazlett says. 鈥淲e鈥檝e done our best to build a laboratory space that mimics a traditional research space. Students working in the SkillsCenter gain the experience of what it would be like to be a member of a laboratory research group鈥攊n charge of maintaining their space, scheduling equipment, restocking materials, etc. The training modules themselves mimic something a trainee would encounter, with resources to help them and guide them in their conceptual understanding and procedural competence.鈥</p><p>Lab proctors鈥攚ho are the course instructor, graduate students in the department and a number of undergraduate students who previously took the course鈥攑rovide on- and off-site guidance for students and assess their work.</p><div class="feature-layout-callout feature-layout-callout-xlarge"><div class="ucb-callout-content"><p>&nbsp;</p><blockquote><p><i class="fa-solid fa-quote-left fa-3x fa-pull-left ucb-icon-color-gold">&nbsp;</i></p><p>What if there was a bridge, something between the classroom and these research spaces that can allow students to gain that necessary experience? That can help equip them to enter those spaces both confidently and competently?"</p><p>&nbsp;</p></blockquote></div></div><p><strong>Learning the scientific process</strong></p><p>Through six semesters, SkillsCenter has grown and evolved from the original 10 students to nearly 100 per semester. The lab space is now open from 9 a.m. to 5 p.m. Monday through Friday thanks to increased staffing, and students can work on their modules when their schedule allows.</p><p>鈥淚t is very important that we have trained lab proctors, and that we instruct our students very carefully on how to engage in this course,鈥 Hazlett says. 鈥淪tudents are instructed that they are responsible for seeking out the resources and guidance they need, and we make sure they know how to access the supports they need.鈥</p><p>Each module requires a certain number of tasks that students complete and submit to proctors for review. Proctors monitor students鈥 work through each module, give feedback and assess their progress through the scientific process鈥攆rom hypothesis through notes and observations to interpretation of results.</p><p>After completing a module and passing all its required tasks, students receive a certificate for each skill, 鈥渟o they can collect these certificates and put those skills on their resumes,鈥 Hazlett says, adding that he and his colleagues are working with ORCiD and digital badge organizations to create digital credentials that students can display to future employers. 鈥淲e also want to embed students鈥 raw data into those badges, so if an employer wants proof of their skills, they have direct evidence of students鈥 technical proficiencies.鈥</p><p>Hazlett and his colleagues also are building a network of industry and academic research lab partners to 鈥渃reate an ecosystem for training STEM students. Many students often excitedly explain to me how they have convinced faculty researchers to let them join their labs because of the experiences they have gained in the SkillsCenter.鈥</p><p><em>Researchers Beiyi Xu, Jennifer Knight, Michael Klymkowsky and Michael Stowell also contributed to the </em>Cell<em> publication.</em></p><hr><p><em>Did you enjoy this article?&nbsp;</em><a href="https://cu.tfaforms.net/73" rel="nofollow"><em>Subscribe to our newsletter.</em></a><em>&nbsp;Passionate about molecular, cellular and developmental biology?&nbsp;</em><a href="/mcdb/donate" rel="nofollow"><em>Show your support.</em></a></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>In new publication, CU 麻豆影院 scientists detail how the SkillsCenter allows students to gain credentials in basic to advanced research skills.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/laboratory_header_0.jpg?itok=jImdXVf1" width="1500" height="772" alt> </div> </div> <div>On</div> <div>White</div> Wed, 05 Jun 2024 22:13:25 +0000 Anonymous 5912 at /asmagazine William B. Wood, pioneering scientist, passes away at 86 /asmagazine/2024/05/13/william-b-wood-pioneering-scientist-passes-away-86 <span>William B. Wood, pioneering scientist, passes away at 86</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2024-05-13T14:04:39-06:00" title="Monday, May 13, 2024 - 14:04">Mon, 05/13/2024 - 14:04</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/william_wood_header.jpg?h=2e976bc2&amp;itok=ZfKNADpe" width="1200" height="800" alt="William Wood"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/897"> Profiles </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/857" hreflang="en">Faculty</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/987" hreflang="en">Obituaries</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> </div> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead"><em>A distinguished professor emeritus of molecular, cellular&nbsp;and developmental biology, Wood helped transform CU 麻豆影院 into a nationally ranked hub of biomedical science, improved science education&nbsp;and appeared on the debut album of folk legend Joan Baez</em></p><hr><p>William Barry Wood III, who loved science, music, poetry&nbsp;and education in equal parts, and was a distinguished professor emeritus in the <a href="/mcdb/" target="_blank" rel="nofollow">Department of Molecular, Cellular&nbsp;and Developmental Biology (MCDB)</a> at the 麻豆影院, passed away on May 9 in 麻豆影院. He was 86.</p><p><a href="/asmagazine/2015/03/16/biologist-has-blazed-trails-research-and-teaching" target="_blank" rel="nofollow">Bill Wood</a> came to CU 麻豆影院 in 1978, leaving a professorship at Caltech to serve as MCDB department chair. He continued in this department as teacher, researcher and administrator until his retirement in 2008. 鈥淗is clear-thinking mind and kind heart helped to make MCDB a nationally ranked department of modern biomedical science,鈥 said Richard McIntosh, another chair of the CU 麻豆影院 department.</p><p>In 1972, following important discoveries early in his career, Wood at age 34 became one of the youngest researchers ever elected to the National Academy of Sciences. Later, Wood also emerged as a pioneer in the shifting field of science education. His innovations contributed important ideas and methods for improving the teaching of science at all levels.</p><div class="feature-layout-callout feature-layout-callout-xlarge"> <div class="ucb-callout-content"><div class="image-caption image-caption-"><p> </p><div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/william_wood_interview.jpg?itok=d01LPPlt" width="750" height="486" alt="William Wood"> </div> <p>William Barry Wood III was a distinguished professor emeritus in the CU 麻豆影院&nbsp;<a href="/mcdb/" target="_blank" rel="nofollow">Department of Molecular, Cellular&nbsp;and Developmental Biology</a>.</p></div></div> </div><p>Bill鈥檚 German-born wife, the late Renate H. Wood, became a distinguished 麻豆影院 poet, and their sons, Oliver and Christopher, have gained international musical recognition as The Wood Brothers.&nbsp;Wood himself was a masterful guitar player, songwriter&nbsp;and folk musician throughout his life.</p><p>In high school, he played in a group with John Hartford, who went on to an impressive career as a revered banjo musician. While still an undergraduate at Harvard in the late 1950s, Bill teamed with Joan Baez on her historic first recording,&nbsp;鈥<a href="https://en.wikipedia.org/wiki/Folksingers_%27Round_Harvard_Square" target="_blank" rel="nofollow">Folksingers 'Round Harvard Square</a>.鈥</p><p>The young scientist earned his PhD in 1963 from Stanford University. As a graduate student there, working with Paul Berg in the Department of Biochemistry, Wood learned important skills for the study of macromolecules, such as nucleic acids and proteins. As a young professor at Caltech, he collaborated with Robert Edgar, a geneticist, to study the formation of a virus that infects bacterial cells, known as a 鈥渂acteriophage鈥 (for bacteria eater).</p><p>Edgar had previously treated samples of T4 bacteriophages with radiation and chemicals that damaged their DNA, making mutations in many different genes. Most of these mutant phages could still infect bacteria, but those bacteria failed to assemble new infective phages&nbsp;as a result of the mutant gene.</p><p>Notably, when bacterial cells were simultaneously infected by two phages that were mutant in different genes, infective phages were produced. Thus, the different viral genomes could complement&nbsp;each other, with each providing a functional copy of the gene that was mutant in the other.</p><p>Wood invented a method by which one took two populations of bacteria, each infected with a different mutant phage, and broke up the cells in each population to make two samples of bacterial cell cytoplasm, filled with whatever each mutant phage could make.&nbsp;</p><p>When these samples were mixed, the materials from one infected population could complement the materials from the other infected population, enabling infective phages to form outside of living bacterial cells.&nbsp;This process became known as 鈥渋n vitro鈥 (in glass) complementation, because the mutant phages complemented each other without a living cell to help.&nbsp;</p><p>This innovation allowed Wood and others to learn by biochemistry and electron microscopy which parts of phage T4 were made by the products of each phage gene.&nbsp;With this information, they could put together a pathway&nbsp;for phage assembly from the protein products of the individual phage genes.&nbsp;</p><p>In vitro complementation became an important tool in the hands of many scientists studying virus formation. This valuable contribution helped biologists in the 1960s and 鈥70s to elucidate the formation of complex viruses and to significantly combat virus infections.</p><p>In the mid-1970s, Wood felt he had contributed what he could to the study of bacterial viruses. His experience combining genetics and biochemistry in the study of hard biological problems led him to seek a new project in an area more complex than the assembly of a virus. One such challenging subject at the time was the problem of how animals develop from a fertilized egg into their adult form.</p><p>A distinguished English scientist, Sydney Brenner, had recently introduced the study of a small round worm, <em>Caenorhabditis elegans,</em> into the field of developmental biology. This tiny animal, only 1 millimeter long, lives in rotting fruit. It can be fed on bacteria in the laboratory, and it grows to adulthood in just three days, making it easy, cheap&nbsp;and fast to study.&nbsp;</p><p>Several young scientists had already gone to Brenner鈥檚 lab to learn how to study <em>C. elegans</em> and brought their projects back to labs in the United States. One of these scientists&nbsp;was David Hirsh, who was on the faculty at MCDB in 麻豆影院, so Wood arranged to do a sabbatical in Hirsh鈥檚 lab.&nbsp;</p><p>During that year, Wood worked with Hirsh and several of his students to make numerous mutant strains of worms. They identified several that inactivated genes important for the early stages in worm development.&nbsp;Particularly informative were their temperature-sensitive&nbsp;mutants, which developed well when grown at&nbsp;temperatures as low as 60<sup>o</sup>, but displayed interesting developmental defects when grown at elevated temperatures closer to 85<sup>o</sup>.&nbsp;</p><p>These mutants identify genes whose products are needed for normal development. Therefore, they have subsequently been studied by numerous labs to elucidate key players and pathways in development.</p><p>Excited by his research experience in 麻豆影院, Wood considered setting up a lab at Caltech to study worm development. But the CU 麻豆影院 MCDB department was seeking a chair who could lead the department in valuable new directions. Several enthusiastic members of the department flew to Pasadena, unannounced, and convinced Wood to move his work and his family to Colorado.</p><p>In 麻豆影院, Wood quickly assembled an excellent lab of his own, and he also organized the hiring of superior scientists engaged in the same process of using genetic manipulation to study complex biological problems.</p><p>At the time, experts were debating whether the developmental fates of individual cells in early embryos are determined by internal factors that are packaged into those cells or determined by external cues from neighboring cells. Wood鈥檚 group found compelling evidence for both internal factors and external cues, a finding that has been borne out across organisms.&nbsp;</p><p>Wood鈥檚 lab discovered a new type of organelle that is not bounded by a membrane. These organelles, called "P granules鈥 in worms, are examples of internal factors that are delivered to particular cells in early embryos and are critical for the normal development of those cells. P granules are the founding members of an ever-growing list of liquid-like condensates that serve diverse roles across organisms.&nbsp;</p><p>Finally, Wood himself studied how an organism develops its left-right axis, which in worms becomes apparent when embryos have only six cells.&nbsp;He documented that one-cell embryos already show signs of knowing their left side from their right. From then on, his Colorado license plate read WORMS1.</p><p><strong>Singing with Joan Baez</strong></p><p>The eldest of five children, Wood grew up in St. Louis, where his father, a renowned physician and medical researcher, taught at Washington University. In 1955, Dr. W. Barry Wood moved his family to Baltimore, when he became the head of the Johns Hopkins Medical School. The elder&nbsp;Wood had been an All-American quarterback at Harvard and a nationally ranked tennis player. Coming from an athletic family, Wood won the Maryland State Junior Tennis Championship at age 17 and played on Harvard鈥檚 varsity tennis team.</p><p>While an undergraduate chemistry major at Harvard, Wood also devoted time to music, playing his guitar in a group called The Raunch Hands&nbsp;and hosting a weekly program on the campus radio station. There he met singer Joan Baez, then in her first year of college. In 1959, Bill and Ted Alevizos teamed with the future folk legend to make a record now renowned as her debut album. The next year, Joan produced her first solo album, 鈥淛oan Baez,鈥 while Bill opted for a career in science.</p><p>In an interview conducted at Stanford in 2015, Wood reflected on that early fork in the road. He recalled with a modest smile his parting with Joan Baez: 鈥淚t was very clear which of us should go to grad school at Stanford and which of us should go to the Newport Folk Festival and become a star.鈥 Pausing, he added: 鈥淚 have to say, with all due respect to the scientists, that was the most fun I ever had, singing with Joan Baez.鈥</p><p>Wood鈥檚 parents were both educators, and throughout his career Wood was interested in finding ways to teach that would help students at all levels learn science efficiently and well. 鈥淲hen my kids started school in the 1970s, I got interested in what they were going to experience, and I was impressed by a book called 'How Children Fail'&nbsp;by John Holt," Wood said.&nbsp;"His message was that for kids to learn, they need to be doing things, not just listening to a teacher. That was my introduction to active learning.鈥</p><div class="feature-layout-callout feature-layout-callout-xlarge"> <div class="ucb-callout-content"><p> </p><blockquote> <p><i class="fa-solid fa-quote-left ucb-icon-color-gold fa-3x fa-pull-left">&nbsp;</i> </p><p>Textbooks were focused on memorizing pathways, names of enzymes and so on, and I wanted to try to put some life into it.鈥</p><p> </p></blockquote> </div> </div><p>Toward the end of his career, Wood turned his full attention to research on science education. In harmony with work spearheaded by Bruce Alberts from the National Academy of Sciences and by Nobel Laureate Carl Wieman in the Department of Physics&nbsp;at CU 麻豆影院, Wood helped to develop a 鈥渜uestions鈥 approach to teaching, suitable for any science pedagogy.&nbsp;</p><p>To challenge and assist college-level science teachers, he worked with Dr. Jo Handelsman, who later became a science advisor for President Barak Obama. The pair started the National Institutes of&nbsp;Undergraduate Education in Biology. Now known as NIST, this thriving organization has had far-reaching effects, helping to train thousands of faculty, especially at R1 institutions, how to teach actively.</p><p>鈥淭extbooks were focused on memorizing pathways, names of enzymes and so on, and I wanted to try to put some life into it,鈥 Wood said. With 鈥渁ctive learning,鈥 lectures become participatory events, and students retain more than when they are simply spoken to. The amount of material presented is reduced, but the amount students retained is greater.</p><p>This approach has been adopted widely, and it follows the Chinese principle of instruction, stated as a motto in Wood鈥檚 first biochemistry book: 鈥淚 hear, and I forget; I see, and I remember; I do, and I understand.鈥 In 2016, the Genetics Society of America gave Wood its Elizabeth W. Jones Award for Excellence in Education, calling him 鈥渁 pioneer in the reform of science teaching.鈥</p><p>The Society cited Wood鈥檚 role in the development of the influential National Academies Summer Institutes for Undergraduate Education in Biology and his service as editor-in-chief of <em>CBE-Life Sciences Education</em>, published by the American Society for Cell Biology. 鈥淏ill is not only an excellent educator himself,鈥 states Rachelle M. Spell of Emory University, 鈥渉e helped start a revolution across STEM teaching.鈥</p><p>In 2018, <a href="/mcdb/jenny-knight" target="_blank" rel="nofollow">Jenny Knight</a>, an associate professor of molecular, cellular and developmental biology at CU 麻豆影院,&nbsp;served as president of the Society for the Advancement of Biology Education (SABER). That year, SABER instituted the <a href="https://saberbio.wildapricot.org/Bill-Wood-Graduate-Talk-Award" rel="nofollow">Bill Wood Graduate Student Talk Award</a>, which was very dear to Wood鈥檚 heart. According to Knight, who knew Wood as her mentor and colleague, he had 鈥渁 passion for supporting the next generation of researchers.鈥</p><hr><p><em>Passionate about molecular, cellular and developmental biology?&nbsp;<a href="/mcdb/donate" target="_blank" rel="nofollow">Show your support.</a></em></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>A distinguished professor emeritus of molecular, cellular and developmental biology, Wood helped transform CU 麻豆影院 into a nationally ranked hub of biomedical science, improved science education and appeared on the debut album of folk legend Joan Baez.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/william_wood_header_0.jpg?itok=ViI9mr6H" width="1500" height="843" alt> </div> </div> <div>On</div> <div>White</div> Mon, 13 May 2024 20:04:39 +0000 Anonymous 5892 at /asmagazine College of Arts and Sciences professors named 2024 American Academy of Arts and Sciences members /asmagazine/2024/04/24/college-arts-and-sciences-professors-named-2024-american-academy-arts-and-sciences <span>College of Arts and Sciences professors named 2024 American Academy of Arts and Sciences members</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2024-04-24T13:33:50-06:00" title="Wednesday, April 24, 2024 - 13:33">Wed, 04/24/2024 - 13:33</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/aaas_header.jpg?h=c4e50db2&amp;itok=KOAGXTq4" width="1200" height="800" alt="Min Han and Arthur Nozik"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1155" hreflang="en">Awards</a> <a href="/asmagazine/taxonomy/term/837" hreflang="en">Chemistry</a> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/857" hreflang="en">Faculty</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> </div> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead"><em>Min Han and Arthur Nozik join a distinguished cohort that includes George Clooney and Jhumpa Lahiri</em></p><hr><p><a href="/mcdb/min-han" rel="nofollow">Min Han</a>, a 麻豆影院 distinguished professor of <a href="/mcdb/" rel="nofollow">molecular, cellular and developmental biology</a>, and <a href="/chemistry/arthur-nozik" rel="nofollow">Arthur Nozik</a>, a CU 麻豆影院 research professor emeritus of <a href="/chemistry/" rel="nofollow">chemistry</a>, have been named <a href="https://www.amacad.org/new-members-2024" rel="nofollow">2024 member</a>s of the American Academy of Arts and Sciences, a cohort that includes <a href="/aerospace/kristine-larson" rel="nofollow">Kristine Larson</a>, a CU 麻豆影院 professor emeritus of &nbsp;<a href="/aerospace/" rel="nofollow">aerospace engineering sciences.</a></p><p>The 250 members elected in 2024 鈥渁re being recognized for their excellence and invited to uphold the Academy鈥檚 mission of engaging across disciplines and divides,鈥 according to an American Academy of Arts and Sciences announcement. The Academy was founded in 1780 to 鈥渉elp a young nation face its challenges through shared purpose, knowledge and ideas.鈥</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><div> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/aaas_crest.jpg?itok=g6_p5zWm" width="750" height="751" alt="American Academy of Arts and Sciences crest"> </div> <p>The American Academy of Arts and Sciences was founded in 1780 by John Adams, John Hancock&nbsp;and 60 colleagues who "understood that a new republic would require institutions able to gather knowledge and advance learning in service to the public good."</p></div></div></div><p>鈥淲e honor these artists, scholars, scientists and leaders in the public, non-profit and private sectors for their accomplishments and for the curiosity, creativity and courage required to reach new heights,鈥 noted&nbsp;David Oxtoby, president of the Academy, in the announcement. 鈥淲e invite these exceptional individuals to join in the Academy鈥檚 work to address serious challenges and advance the common good.鈥</p><p>The 2024 cohort also includes actor and producer George Clooney, author Jhumpa Lahiri and Apple CEO Tim Cook.</p><p><a href="/lab/han/" rel="nofollow">Han鈥檚 research</a> uses&nbsp;<em>Caenorhabditis elegans</em>&nbsp;and mouse models to study diverse biological problems related to animal development, stress response, nutrient sensing and human disease by applying both genetic and biochemical methods.</p><p>He and his research colleagues in the Han Lab work to identify and analyze mechanisms by which animals sense the deficiency of specific nutrients, including lipids, nucleotides and micronutrients, and regulate development, reproductivity and food-related behaviors.</p><p>Nozik, who also is a senior research fellow emeritus at the National Renewable Energy Laboratory in Golden, has researched the basic phenomena at semiconductor-molecule interfaces and the dynamics of electron relaxation and transfer across these interfaces. The CU 麻豆影院 <a href="/rasei/nozik-lecture" rel="nofollow">Renewable and Sustainable Energy Institute鈥檚 </a>Nozik Lecture Series is named in his honor.</p><p><a href="https://www.amacad.org/directory?field_affiliation=University%20of%20Colorado%20麻豆影院&amp;field_class_section=All&amp;field_class_section_1=All&amp;field_deceased=All&amp;sort_bef_combine=field_election_year_DESC" rel="nofollow">Previous years鈥 CU 麻豆影院 nominees</a> include <a href="/physics/henry-kapteyn" rel="nofollow">Henry Kapteyn</a>, <a href="/biochemistry/karolin-luger" rel="nofollow">Karolin Luger</a>, <a href="/philosophy/people/emeriti/alison-jaggar" rel="nofollow">Alison Jaggar</a> and <a href="/biochemistry/natalie-ahn" rel="nofollow">Natalie Ahn</a>, among many others. In all, 42 CU 麻豆影院 faculty&nbsp;members have been named American Academy of Arts and Sciences fellows.</p><p><em>Top image: Min Han (left) and Arthur Nozik.</em></p><hr><p><em>Did you enjoy this article?&nbsp;</em><a href="https://cu.tfaforms.net/73" rel="nofollow"><em>Subscribe to our newsletter.</em></a><em>&nbsp;Passionate about arts and sciences?&nbsp;</em><a href="/artsandsciences/giving" rel="nofollow"><em>Show your support.</em></a></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>Min Han and Arthur Nozik join a distinguished cohort that includes George Clooney and Jhumpa Lahiri.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/aaas_header.jpg?itok=ZHqnKs-r" width="1500" height="853" alt> </div> </div> <div>On</div> <div>White</div> Wed, 24 Apr 2024 19:33:50 +0000 Anonymous 5878 at /asmagazine CU Cancer Center leaders aim to use novel molecule to fight cancer /asmagazine/2024/02/29/cu-cancer-center-leaders-aim-use-novel-molecule-fight-cancer <span>CU Cancer Center leaders aim to use novel molecule to fight cancer</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2024-02-29T08:59:43-07:00" title="Thursday, February 29, 2024 - 08:59">Thu, 02/29/2024 - 08:59</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/tin_tin_su_thumbnail.jpg?h=29b9274a&amp;itok=HpPRGJLr" width="1200" height="800" alt="Tin Tin Su and firecracker bush plant"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> <a href="/asmagazine/taxonomy/term/456" hreflang="en">cancer</a> </div> <span>Mark Harden</span> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead"><em>Tin Tin Su of CU 麻豆影院 and Antonio Jimeno of the CU School of Medicine say acceleration-initiative funds will help speed a promising, developed-in-Colorado cancer therapy to patients</em></p><hr><p>After working eight years on a new way to attack some cancers, a pair of&nbsp;<a href="https://medschool.cuanschutz.edu/colorado-cancer-center" rel="nofollow">University of Colorado Cancer Center</a>&nbsp;researchers are closer to their goal of bringing their therapy to patients鈥攁s one of nine research endeavors receiving funding from the&nbsp;<a href="https://www.cuanschutz.edu/about/leadership/chancellor/anschutz-acceleration-initiative" rel="nofollow">Anschutz Acceleration Initiative</a>&nbsp;(AAI).</p><p>The project is led jointly by&nbsp;<a href="/mcdb/tin-tin-su" rel="nofollow">Tin Tin Su</a>, co-leader of the cancer center鈥檚&nbsp;<a href="https://medschool.cuanschutz.edu/colorado-cancer-center/research/research-programs/molecular-and-cellular-oncology" rel="nofollow">Molecular and Cellular Oncology Program</a> and professor of <a href="/mcdb/" rel="nofollow">molecular, cellular and developmental biology</a> at the 麻豆影院, and <a href="https://som.cuanschutz.edu/Profiles/Faculty/Profile/3752" rel="nofollow">Antonio Jimeno</a>, a co-leader of the CU Cancer Center鈥檚&nbsp;<a href="https://medschool.cuanschutz.edu/colorado-cancer-center/research/research-programs/developmental-therapeutics" rel="nofollow">Developmental Therapeutics Program</a>&nbsp;and professor in the&nbsp;<a href="https://medschool.cuanschutz.edu/medicine" rel="nofollow">CU Department of Medicine</a>'s&nbsp;<a href="https://medschool.cuanschutz.edu/medical-oncology" rel="nofollow">Division of Medical Oncology</a>.</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><div> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/tin_tin_su.jpg?itok=OCBTzO9S" width="750" height="741" alt="Tin Tin Su"> </div> <p>Tin Tin Su, a CU 麻豆影院 professor of molecular, cellular and developmental biology, discovered that a molecule found in the firecracker bush can be synthesized to target cancer stem cells.&nbsp;</p></div></div></div><p>Jimeno says it鈥檚 significant that the AAI award is for a potential cancer therapy 鈥渢hat was discovered in Colorado and will use Colorado funds from a Colorado donor to help Colorado cancer patients.鈥</p><p>He adds: 鈥淗ere at the CU Cancer Center, we can get things done really well and really quickly, provided we have the focus and the resources. And this grant provides both.鈥</p><p>Their work involves the use of a synthetic small molecule called SVC112, which has been shown to effectively target cancer stem cells in&nbsp;<a href="https://medschool.cuanschutz.edu/colorado-cancer-center/for-patients-families/cancers-we-treat/head-and-neck" rel="nofollow">head and neck cancers</a>, the main focus of Jimeno鈥檚&nbsp;<a href="https://medschool.cuanschutz.edu/medical-oncology/research/head-and-neck-cancer-program/jimeno-research-lab" rel="nofollow">research lab</a>.</p><p>Cancer stem cells produce cells that make up most of a tumor鈥檚 bulk. They often are resistant to traditional therapies such as radiation and chemotherapy and can recover from treatment to produce more tumor cells. The U.S. Food &amp; Drug Administration has approved the use of protein synthesis inhibitors that slow or stop cancer cell growth, but they can be toxic to healthy cells as well as cancer cells.</p><p>SVC112 was originally synthesized by SuviCa, Inc., a 麻豆影院-based biotechnology company co-founded by Su. It鈥檚 based on the chemical bouvardin, found in the firecracker bush,&nbsp;<em>Bouvardia ternifolia</em>, a red-flowering plant that grows in the Southwest and Mexico.</p><p>The discovery in Su鈥檚 research lab at CU 麻豆影院 of bouvardin鈥檚 remarkable ability to prevent regeneration of tissues in the fruit fly led to the current studies.</p><p>Previous research&nbsp;by Jimeno, Su, and others showed that SVC112 can keep cancer stem cells from manufacturing more tumor cells. The pre-clinical research indicated that SVC112 can be more effective than the FDA-approved protein synthesis inhibitor&nbsp;homoharringtonin (HHT), and with less toxicity, while also increasing the effects of radiation treatment.</p><p>鈥淚t鈥檚 effective in ways that other drugs are not,鈥 Su says. 鈥淭his compound has shown efficacy in squamous head and neck cancer, in salivary gland cancer, colorectal cancer, and leukemia models. This is very exciting, because it proves the biologic point that multiple tumor types rely on the same mechanisms, the same proteins, to become invasive, to grow and to metastasize.鈥</p><div class="feature-layout-callout feature-layout-callout-xlarge"><div class="ucb-callout-content"><p>&nbsp;</p><blockquote><p><i class="fa-solid fa-quote-left fa-3x fa-pull-left ucb-icon-color-gold">&nbsp;</i></p><p>This is very exciting, because it proves the biologic point that multiple tumor types rely on the same mechanisms, the same proteins, to become invasive, to grow and to metastasize.鈥</p><p>&nbsp;</p></blockquote></div></div><p>Su points out that SVC112 passed three reviews to be approved to receive milestone-based support from the National Cancer Institute鈥檚 (NCI)&nbsp;<a href="https://next.cancer.gov/" rel="nofollow">Experimental Therapeutics Program (NExT)</a>&nbsp;in 2023, providing resources for SVC112鈥檚 development. NCI is part of the National Institutes of Health.</p><p>Jimeno says that the five-year AAI grant will help fund the arduous next steps in developing SVC112. First, the researchers will conduct pre-clinical experiments leading to an investigational new drug filing to the FDA within two years. Next, he says, plans call for a first-in-human Phase 1a&nbsp;<a href="https://medschool.cuanschutz.edu/colorado-cancer-center/clinical-trials" rel="nofollow">clinical trial</a>&nbsp;in cancer patients 鈥渢o determine the safe, optimal way of delivering this to humans, employing all the clinical-trials capabilities of our university, including the&nbsp;<a href="https://medschool.cuanschutz.edu/colorado-cancer-center/clinical-trials/ccto-team" rel="nofollow">Cancer Center Clinical Trials Office</a>,鈥 followed by a Phase 1b trial.</p><p>Cancers to be targeted in later stages of the clinical trials may change based on early results, if the researchers see patients with certain cancers responding especially well, Jimeno says.</p><p>The AAI recipients were announced in January by CU School of Medicine Dean John J. Reilly, Jr., MD, during his annual&nbsp;<a href="https://news.cuanschutz.edu/medicine/2024-state-of-the-school" rel="nofollow">State of the School address</a>.</p><p><a href="https://news.cuanschutz.edu/cancer-center/author/mark-harden" rel="nofollow"><em>Mark Harden</em></a><em>&nbsp;is a writer for the Anschutz School of Medicine, which published a </em><a href="https://news.cuanschutz.edu/cancer-center/svc112-weapon-against-cancer" rel="nofollow"><em>slightly different version of this story</em></a><em>.</em></p><p><em>Top image:&nbsp;</em>Bouvardia ternifolia<em>, or firecracker bush (Photo: U.S. Forest Service)</em></p><hr><p><em>Did you enjoy this article?&nbsp;</em><a href="https://cu.tfaforms.net/73" rel="nofollow"><em>Subscribe to our newsletter.</em></a><em>&nbsp;Passionate about molecular, cellular and developmental biology?&nbsp;</em><a href="/mcdb/donate" rel="nofollow"><em>Show your support.</em></a></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>Tin Tin Su of CU 麻豆影院 and Antonio Jimeno of the CU School of Medicine say acceleration-initiative funds will help speed a promising, developed-in-Colorado cancer therapy to patients,</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/bouvardia_ternifolia.jpg?itok=OT3OQZFu" width="1500" height="1125" alt> </div> </div> <div>On</div> <div>White</div> Thu, 29 Feb 2024 15:59:43 +0000 Anonymous 5838 at /asmagazine Small but not simple, bacteria compute without thinking /asmagazine/2023/09/01/small-not-simple-bacteria-compute-without-thinking <span>Small but not simple, bacteria compute without thinking</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2023-09-01T15:26:41-06:00" title="Friday, September 1, 2023 - 15:26">Fri, 09/01/2023 - 15:26</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/artboard_2-23-09-01.jpg?h=d1cb525d&amp;itok=jmN6Vv7c" width="1200" height="800" alt="AI-generated bacteria image"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1178" hreflang="en">Biology</a> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> </div> <a href="/asmagazine/rachel-sauer">Rachel Sauer</a> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead">New CU 麻豆影院 research shows that bacteria harness physical laws to operate at the edge of chaos and use calcium to independently diversify and find a place to settle down</p><hr><p>Let鈥檚 talk about the bacteria in our colons.</p><p>Like all life on this planet, their main goal is to replicate their genome, passing it on to the next generation. But hostile environments like the colon force them to make tough choices: Hunker down here or swim farther downstream in hopes of greener pastures?</p><p>Meanwhile, all their kin are making the same calculation. Each has the same genome but can鈥檛 follow the same instruction manual or else they鈥檒l all land on the same spot. They must diversify. So, how does a single-cell organism lacking the benefit of billions of neurons know how to do that?</p><p><a href="https://www.science.org/doi/full/10.1126/sciadv.adg3028?af=R" rel="nofollow">Newly published research</a> finds that bacteria鈥攁nd not just the kinds in our colons, but many types in many environments鈥攗se changes in calcium, controlled through a process called 鈥渟elf-organized criticality,鈥 to spontaneously diversify without the need for communication between cells. Bacteria use calcium not only in governing the transition to a biofilm, but in movement, maintaining cell structure and in infection.</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><div> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/christian-meyer-683x1024.png?itok=Rw0pdPSb" width="750" height="1026" alt="Christian Meyer"> </div> <p>Christian Meyer, a postdoctoral fellow in the 麻豆影院 Department of Molecular, Cellular and Developmental Biology, researched how bacteria use calcium to diversify.</p></div></div></div><p>Understanding how calcium is regulated in bacteria may have significant future implications for, among other applications, treating harmful biofilms that can form on surfaces. Further research may help scientists interrupt a bacterium鈥檚 calcium dynamics, perhaps preventing it from settling on a surface in the first place.</p><p>鈥淏acteria have so much to teach us,鈥 says Christian Meyer, a postdoctoral fellow in the 麻豆影院 <a href="/mcdb/" rel="nofollow">Department of Molecular, Cellular and Developmental Biology</a> who completed the research with former CU 麻豆影院 assistant professor Joel Kralj. 鈥淭here鈥檚 a fallacy in assuming that because something is small, it鈥檚 simple. Bacteria are using statistical mechanics to run computations instantaneously that I run over an entire weekend on my computer.鈥</p><p><strong>Not more evolved than bacteria</strong></p><p>In fact, Meyer鈥檚 research was inspired, in part, by the prevalent notion that humans are the pinnacle of evolution and the idea that 鈥渨e鈥檙e more evolved than ________鈥濃攖han amoebas, than earthworms, than bacteria.</p><p>鈥淭hat鈥檚 not at all what evolutionary theory is saying,鈥 Meyer notes. 鈥淭he theory is that you, as a human, would make a horrible worm. Each unto their own niche. There are lots of systems in the natural world that operate without 鈥榠ntelligence,鈥 by which I mean that bacteria aren鈥檛 sitting there with a billion neurons at their disposal to figure out how much calcium they should let in right now. They have to do that rapidly and in changing environments, but also energy efficiently, and do it instantaneously鈥攖hey鈥檙e not thinking.鈥</p><p>Originally, Meyer and his research colleagues studied antibiotics and how they modify the electrophysiology鈥攐r the electrical properties of cells that include current and voltage鈥攐f bacteria. <a href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8148219/" rel="nofollow">They showed</a> that <em>E. coli</em> bacteria, when treated with certain antibiotics, respond with changes in membrane potential.</p><p>In hundreds of videos of antibiotic-treated bacteria, the scientists watched calcium, as a marker of cell membrane voltage, going in and out of the cell. Instead of general randomness in that process, they saw power laws at work. Power laws describe the probability of an event happening as a function of its magnitude or duration. For example, the relationship between the probability and magnitude of an earthquake follows a power law, with large earthquakes being less likely than small ones.</p><p>Through further research with strains of <em>E. coli</em>, <em>B. subtilis</em> and <em>P. putida</em> bacteria, they found that calcium fluctuations resulted from a property known as self-organized criticality (SOC). SOC is a general property of many natural systems that are poised at the boundary between two phases without external control. Rather than separate states of matter, the phases are defined as different dynamical regimes, and often SOC systems are poised at the boundary between ordered and chaotic dynamics鈥攚hat has been described as 鈥渙rder at the edge of chaos.鈥</p><p><strong>Using self-organized criticality</strong></p><p>Meyer and Kralj found that SOC can explain how bacteria cells exist on a knife鈥檚 edge between very high levels of calcium outside the cell and calcium levels that are about 100,000 times lower inside the cell.&nbsp; At high levels, calcium can be cytotoxic, meaning it can damage or kill cells. So, the bacteria鈥榮 membranes operates somewhat like a dam, opening and closing rapidly and often鈥攂ut not in a consistent pattern鈥攖o pump calcium in and out.</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><div> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/still_shot.png?itok=0V57iAmP" width="750" height="655" alt="Bacteria expressing calcium sensor"> </div> <p>Bacteria expressing a fluorescent calcium sensor.</p></div></div></div><p>The research findings also suggest an evolutionary advantage of SOC, because it provides a way for individual bacteria to diversify, even without communicating with one another. SOC could be compared to a random number generator inside each bacteria cell, one that鈥檚 power law-based 鈥渟o big events are more likely than they would be otherwise,鈥 Meyer says.</p><p>鈥淏ecause of this, going back to the example of bacteria in the colon, a bacterium will swim farther down the colon than it would if it was just randomly swimming. This is an extremely efficiently search strategy, to use power law-based searches in a domain. From my perspective, I think how incredible it is that they鈥檙e using a physical process to run computations to figure out what they should be doing, all without talking to each other or 鈥榯hinking鈥.鈥</p><p>While understanding how calcium dynamics in bacteria result from SOC is an important step, further research will need to study how to target calcium while leaving a bacterium鈥檚 membrane electrical voltage intact. Then researchers can begin working toward applications like treating harmful biofilms.</p><p>鈥淚鈥檝e really grown to admire what bacteria are capable of doing,鈥 Meyer says. 鈥淚magine being a one-femtoliter cell (one-quadrillionth of a liter) and having to survive in the crazy world we live in with all the changes in temperature and pH and nutrients. It鈥檚 a hard world, but they鈥檝e come up with incredibly elegant solutions to the complex challenges they face.</p><p>鈥淚n some ways, I鈥檝e been inspired thinking how can we co-opt some of these natural processes for solving some of the issues humans face and do it in an intelligent way, things bacteria figured out a long time ago. SOC systems are an interesting mixture of flexible yet robust without the need for constant tuning. These seem desirable properties for many anthropogenic systems, from AI to social networks.&nbsp;I鈥檝e come to appreciate bacteria as good examples of combating that fallacy of we are the pinnacle of evolution. They have amazing secrets to teach us, we just have to look at them.鈥</p><p><em>Top image: AI-generated picture of bacteria</em></p><hr><p><em>Did you enjoy this article?&nbsp;</em><a href="https://cu.tfaforms.net/73" rel="nofollow"><em>Subscribe to our newsletter.</em></a><em>&nbsp;Passionate about molecular biology? </em><a href="/mcdb/donate" rel="nofollow"><em>Show your support.</em></a></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>New CU 麻豆影院 research shows that bacteria harness physical laws to operate at the edge of chaos and use calcium to independently diversify and find a place to settle down.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/artboard_2-23-09-01.jpg?itok=VO96DTYT" width="1500" height="844" alt> </div> </div> <div>On</div> <div>White</div> Fri, 01 Sep 2023 21:26:41 +0000 Anonymous 5699 at /asmagazine Genetic 鈥榝reeloaders鈥 may play key role in immune system /asmagazine/2023/08/29/genetic-freeloaders-may-play-key-role-immune-system <span>Genetic 鈥榝reeloaders鈥 may play key role in immune system</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2023-08-29T11:24:53-06:00" title="Tuesday, August 29, 2023 - 11:24">Tue, 08/29/2023 - 11:24</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/istock-1319439243.jpg?h=56d0ca2e&amp;itok=BCTKmhNY" width="1200" height="800" alt="colorful illustration of DNA strands"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/30"> News </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/1155" hreflang="en">Awards</a> <a href="/asmagazine/taxonomy/term/1242" hreflang="en">Division of Natural Sciences</a> <a href="/asmagazine/taxonomy/term/857" hreflang="en">Faculty</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> </div> <a href="/asmagazine/rachel-sauer">Rachel Sauer</a> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead">CU 麻豆影院 researcher Edward Chuong recently received an international award for his lab鈥檚 work studying transposons in the human genome</p><hr><p>Our genome, it turns out, is full of freeloaders鈥攕elfish elements that behave like viruses, because they exist to copy and paste themselves, but unlike viruses, they can鈥檛 leave the cell.</p><p>Called transposons, they compose about 50% of the human genome. In fact, most life on Earth contains transposons in their genomes and scientists theorize that transposons have existed since the early beginnings of life on this planet.</p><p>However, just because transposons can鈥檛 leave a cell doesn鈥檛 mean they鈥檙e merely 鈥渏unk DNA鈥 or bugs in the genetic code that can鈥檛 affect the cell. <a href="/biofrontiers/edward-chuong" rel="nofollow">Edward Chuong</a>, an assistant professor of <a href="/mcdb/" rel="nofollow">molecular, cellular and developmental biology</a> at the 麻豆影院, has found that transposons play a role in the human immune system and how cells communicate within it.</p><p>Chuong recently was recognized for this work by the International Cytokine &amp; Interferon Society with&nbsp;the <a href="https://cytokinesociety.org/congratulations-edward-chuong/" rel="nofollow">2023 ICIS-Regeneron New Investigator Award for Excellence in Cytokine and Interferon Research</a>. The award will be presented in October at the <a href="https://athens.cytokinesociety.org/2023/08/10/icis-awards-presentations-at-cytokines-2023/" rel="nofollow">Cytokines 2023</a> conference in Athens, Greece.</p><div class="feature-layout-callout feature-layout-callout-large"><div class="ucb-callout-content"><div> <div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/edward_chuong.jpg?itok=q0D-u6EK" width="750" height="938" alt="Edward Chuong"> </div> <p>Researcher Edward Chuong recently earned the 2023 ICIS-Regeneron New Investigator Award for Excellence in Cytokine and Interferon Research&nbsp;from the International Cytokine &amp; Interferon Society.</p></div></div></div><p>Chuong and his research colleagues in the <a href="/lab/chuong" rel="nofollow">Chuong Lab</a> have studied how transposons can affect signaling by interferons, which are proteins produced by many types of cells in response to infection. They found that transposons can both help and hinder the interferon response of cells.</p><p>鈥淥ne way to think about transposons is they鈥檙e inherently parasites that can occasionally be domesticated to help their hosts,鈥 Chuong says. 鈥淲e found in certain cells that when we deleted the transposon but not the gene, we broke the function necessary for an antiviral response. We showed that cells could no longer respond to a virus because they were missing this transposon, which was an interesting twist to the evolutionary arms race against disease. We鈥檙e starting to see we鈥檝e gotten some help from very old viral infections to fight new ones.鈥</p><p><strong>Not all junk DNA</strong></p><p>Chuong and his colleagues have extensively studied endogenous retroviruses, a type of transposon originating from past retroviral infections. A retrovirus, one of which is HIV, is a type of RNA virus that has a special enzyme to convert its genetic information into DNA. When it invades a cell, it can insert that DNA into the host cell鈥檚 DNA and fundamentally change its genome. When this happens to cells that give rise to sperm or egg cells, the retrovirus can become a part of the next generation鈥檚 genome.</p><p>They identified MER41, an ancient retrovirus that invaded the genomes of humans鈥 primate ancestors more than 50 million years ago and found that it had been 鈥渄omesticated鈥 to regulate important immune-defense genes, including the antiviral gene AIM2.</p><p>鈥淚f we consider that key parts of our DNA are not human in origin, it implies that we are all genetically modified organisms, being changed in important ways by ancient transposons and viruses,鈥 Chuong says. 鈥淲hat we think of as 鈥榟uman鈥 DNA is likely to be less than half of the human genome sequence. Throughout our evolutionary history, transposons have been invading and replicating within our genome, and eventually going extinct. Yet, each invasion leaves behind a 鈥榝ossil record鈥 of potentially thousands of copies in the genome.</p><p>鈥淪o, the vast majority of these transposons are junk DNA, but not all of them. We thought that some of them must be important and must have shaped our evolution and biology.鈥</p><p>A classic example of this is a set of genes called RAG1 and RAG2, which are responsible for shuffling human DNA to generate the virtually infinite variation in antibodies for adaptive immune response. Researchers have learned that these proteins originated from what was once a parasite 鈥渁nd our evolutionary ancestors were able to co-opt these proteins for an immune function,鈥 Chuong says. 鈥淭ransposons are a pivotal source of new genetic material and are increasingly appreciated to be important for adaptation and change in DNA.鈥</p><p><strong>Understanding immune response</strong></p><p>Chuong鈥檚 research on transposons鈥 role in the immune system has looked at how they can regulate immune signaling and how they affect the communication system cells use to coordinate immune response.</p><div class="feature-layout-callout feature-layout-callout-xlarge"><div class="ucb-callout-content"><p>&nbsp;</p><blockquote><p><i class="fa-solid fa-quote-left fa-3x fa-pull-left ucb-icon-color-gold">&nbsp;</i></p><p><strong>We鈥檙e starting to see we鈥檝e gotten some help from very old viral infections to fight new ones."</strong></p><p>&nbsp;</p></blockquote></div></div><p>鈥淲hen you get infected by a virus, immune cells detect that and release many cytokines, which are signaling proteins that help control inflammation; one of the most important of these is interferon,鈥 Chuong says. 鈥淥ther cells will detect interferon using a receptor on the outside of the cell, which causes the activation of immune genes.</p><p>鈥淏ut these are not genes that you want on all the time; that鈥檚 what would lead to autoimmunity. So, when a cell is stimulated with interferon, several hundred genes with antiviral and inflammatory functions become activated.鈥</p><p>Activating interferon activates transcription factors, which are proteins that modulate how a cell translates DNA to RNA. They travel into the cell鈥檚 nucleus and trigger gene expression, or the process by which instructions in DNA are turned into a functional product like protein.</p><p>鈥淭he work that this award recognizes shows that a lot of these regulatory elements, you can think of them as switches or knobs,鈥 Chuong says. 鈥淭hey鈥檙e not coding DNA, but often are around or upstream of a gene. We鈥檝e found that these non-coding regulatory elements that control immune gene expression are themselves derived from transposons.鈥</p><p>This research has potential implications for understanding and treating many diseases, including cancer. Chuong and his colleagues have found that some transposons that are usually inactive in healthy cells become reactivated in tumor cells. Future research may delve into what that means for making the immune system more susceptible to therapy.</p><hr><p><em>Did you enjoy this article?&nbsp;</em><a href="https://cu.tfaforms.net/73" rel="nofollow"><em>Subscribe to our newsletter.</em></a><em>&nbsp;Passionate about genetic research? </em><a href="/mcdb/donate" rel="nofollow"><em>Show your support.</em></a></p><p>&nbsp;</p></div> </div> </div> </div> </div> <div>CU 麻豆影院 researcher Edward Chuong recently received an international award for his lab鈥檚 work studying transposons in the human genome.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/istock-1319439243.jpg?itok=dIfdP5qk" width="1500" height="1000" alt> </div> </div> <div>On</div> <div>White</div> Tue, 29 Aug 2023 17:24:53 +0000 Anonymous 5695 at /asmagazine Pioneering biologist elected to National Academy of Sciences /asmagazine/2023/05/12/pioneering-biologist-elected-national-academy-sciences <span>Pioneering biologist elected to National Academy of Sciences</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2023-05-12T12:13:20-06:00" title="Friday, May 12, 2023 - 12:13">Fri, 05/12/2023 - 12:13</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/screen_shot_2023-05-12_at_12.22.29_pm_copy.png?h=539c3299&amp;itok=ojCs_0uR" width="1200" height="800" alt="screen shot"> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/46"> Kudos </a> <a href="/asmagazine/taxonomy/term/30"> News </a> <a href="/asmagazine/taxonomy/term/897"> Profiles </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> </div> <a href="/asmagazine/lisa-marshall">Lisa Marshall</a> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><h2>Gia Voeltz, CU 麻豆影院 professor of molecular, cellular and developmental biology, changed the way we visualize cells</h2><hr><p>Think back to your middle school biology days, and you might recall textbook images of a circular cell, its internal organs, or 鈥渙rganelles,鈥 spread out across it with little contact or interaction.</p><p>Shortly after cell biologist Gia Voeltz arrived at the 麻豆影院 in 2006, she peered through one of the world鈥檚 strongest electron microscopes and saw something different: One of those organs, the endoplasmic reticulum, was actually touching the others, seemingly influencing their position, growth and behavior.</p><p>The discovery forever changed our understanding of the structure and function of cells, helped ignite new interest in the field of cell biology and is now shedding new light on what goes wrong to cause diseases, including neurodegenerative diseases.</p><div class="feature-layout-callout feature-layout-callout-medium"> <div class="ucb-callout-content"><div class="image-caption image-caption-none"><p> </p><div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/voeltz_img_6752_800x1000.jpg?itok=D7MGwFIV" width="750" height="938" alt="volt"> </div> <p><strong>At the top of the page</strong>: Gia Voeltz in her lab. <strong>Above</strong>: Gia Voeltz.</p></div></div> </div><p>This month, it also earned Voeltz a place in the National Academy of Sciences, one of the highest professional honors a scientist can achieve.</p><p>The NAS also elected theoretical physicist Anna Maria Rey, a professor adjoint of physics and fellow with the National Institute of Standards and Technology and JILA, to the organization. (Read more about that&nbsp;<a href="https://www.nist.gov/news-events/news/2023/05/nistjila-physicist-ana-maria-rey-elected-national-academy-sciences" rel="nofollow">here)</a>.</p><p>鈥淭his is a huge recognition not just for me and my lab members but for our entire community,鈥 said Voeltz, a professor of molecular, cellular and developmental biology (MCDB). 鈥淚 feel so fortunate that I鈥檝e had the kind of environment that we have here at CU to be able to do this work.鈥</p><p>Voeltz鈥 research centers around the endoplasmic reticulum (ER), an organelle historically drawn as something resembling a stack of pancakes and set apart from the kidney-shaped mitochondria (the cell鈥檚 energy centers) and round endosomes (which regulate cell growth).</p><p>Keith Porter, who chaired the MCDB department in the late 1960s and established what remains one of the world鈥檚 most sophisticated electron microscopy facilities on campus, coined the term 鈥渆ndoplasmic reticulum鈥 in the early 1950s.</p><p>But until Voeltz鈥 discovery, the ER was considered a workhorse, viewed as a simple protein factory set apart from the intracellular action.</p><p>In reality, her lab discovered, the ER is more like a lacy and dynamic coral, spread out across the cytoplasm with the cell鈥檚 other organs, clinging to it like ornaments on a tree. Instead of those organs鈥 being isolated and doing their own thing, they are all connected and communicating through the ER.</p><p>鈥淓veryone thought they knew what the ER did, but it turns out it does a lot more than we thought,鈥 said Voeltz. 鈥淎nd it is extremely medically relevant.鈥</p><p>In 2018, Voeltz was named a Howard Hughes Medical Institute (HHMI) investigator and awarded $8 million to take her research wherever she wanted.</p><p>She and her trainees have since doubled down on exploring what happens when things go wrong with the ER.</p><p>For instance, she notes, a host of deadly RNA viruses including SARS CoV-2, the virus that causes COVID 19, wrap themselves in the ER membrane 鈥渓ike an invisible cloak鈥 to evade the immune system and replicate.</p><p>Voeltz and her students are among a handful of groups in the world exploring the ER鈥檚 role in viral replication and imagine a day when that process could be disrupted to prevent or treat such infections.</p><p>Meanwhile, she鈥檚 also looking into how certain proteins regulate the critical interaction between the ER and other organelles, and what happens when those proteins are mutated in developing brain and nerve cells.</p><div class="feature-layout-callout feature-layout-callout-xlarge"> <div class="ucb-callout-content"><p> </p><blockquote> <p><i class="fa-solid fa-quote-left ucb-icon-color-gold fa-3x fa-pull-left">&nbsp;</i> </p><p><strong>It鈥檚 really the first step in understanding how a mutation in a gene can lead to a mutant protein and affect the whole biology of the neuron. If we could somehow correct that, we could potentially treat a host of diseases that are currently incurable.鈥</strong></p><p> </p></blockquote> </div> </div><p>The lab is currently studying the roots of an incurable childhood neurodegenerative disorder called hereditary spastic paraplegia, HSP, that weakens, stiffens and causes tremors in the legs and can also cause blindness and cognitive impairment.&nbsp;</p><p>In a recent paper, they identified a key protein that influences the shape of the ER and, in turn, influences how axons鈥攏erve fibers that carry signals from the brain to the limbs鈥攆orm.</p><p>When the protein is missing or mutated, they found, a domino-effect occurs, with the ER misshapen, other organelles disrupted and axons developing improperly.&nbsp;</p><p>鈥淚t鈥檚 really the first step in understanding how a mutation in a gene can lead to a mutant protein and affect the whole biology of the neuron. If we could somehow correct that, we could potentially treat a host of diseases that are currently incurable.鈥</p><p>For now, what Voeltz is most proud of is the way her research has shaped biology education.</p><p>Already, some textbook illustrators have begun to draw the cell in a different way because of her work. She hopes that continues.</p><p>鈥淚 look forward to the day when the front cover of a cell biology textbook has a picture of organelles that are all interacting with each other. That would make me really proud.鈥</p></div> </div> </div> </div> </div> <div>Gia Voeltz, CU 麻豆影院 professor of molecular, cellular and developmental biology, changed the way we visualize cells.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/voeltz.jpg?itok=jtXfoaIf" width="1500" height="689" alt> </div> </div> <div>On</div> <div>White</div> Fri, 12 May 2023 18:13:20 +0000 Anonymous 5630 at /asmagazine Artist vivifies the pain, diaspora and tragedy of Kashmir /asmagazine/2022/12/21/artist-vivifies-pain-diaspora-and-tragedy-kashmir <span>Artist vivifies the pain, diaspora and tragedy of Kashmir</span> <span><span>Anonymous (not verified)</span></span> <span><time datetime="2022-12-21T11:25:30-07:00" title="Wednesday, December 21, 2022 - 11:25">Wed, 12/21/2022 - 11:25</time> </span> <div> <div class="imageMediaStyle focal_image_wide"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/focal_image_wide/public/article-thumbnail/4x5_outstanding.jpg?h=8dbecc6e&amp;itok=X2PrlxKV" width="1200" height="800" alt="Shloka Dhar posing next to her thesis project made of metal and fabric."> </div> </div> <div role="contentinfo" class="container ucb-article-categories" itemprop="about"> <span class="visually-hidden">Categories:</span> <div class="ucb-article-category-icon" aria-hidden="true"> <i class="fa-solid fa-folder-open"></i> </div> <a href="/asmagazine/taxonomy/term/46"> Kudos </a> </div> <div role="contentinfo" class="container ucb-article-tags" itemprop="keywords"> <span class="visually-hidden">Tags:</span> <div class="ucb-article-tag-icon" aria-hidden="true"> <i class="fa-solid fa-tags"></i> </div> <a href="/asmagazine/taxonomy/term/438" hreflang="en">Art and Art History</a> <a href="/asmagazine/taxonomy/term/174" hreflang="en">Molecular, Cellular and Developmental Biology</a> <a href="/asmagazine/taxonomy/term/686" hreflang="en">Research</a> <a href="/asmagazine/taxonomy/term/1102" hreflang="en">Undergraduate Students</a> </div> <a href="/asmagazine/clint-talbott">Clint Talbott</a> <div class="ucb-article-content ucb-striped-content"> <div class="container"> <div class="paragraph paragraph--type--article-content paragraph--view-mode--default 3"> <div class="ucb-article-text" itemprop="articleBody"> <div><p class="lead"><em>Shloka Dhar, who majored in art practices and molecular, cellular and developmental biology, is the College of Arts and Sciences鈥 outstanding graduate for fall 2022</em></p><hr><p>Shloka Dhar began her studies at the 麻豆影院 with a plan: take a pre-med track to become a doctor. Four-and-a-half years later, she鈥檚 chosen a path that better reflects who she is and where she is from.</p><p>Last week, Dhar graduated with a BA in molecular, cellular and developmental biology, along with a Bachelor of Fine Arts in art practices, <em>summa cum laude</em>. She also has been named the outstanding graduate of the College of Arts and Sciences for fall 2022.</p><div class="feature-layout-callout feature-layout-callout-large"> <div class="ucb-callout-content"><div class="image-caption image-caption-"><p> </p><div class="imageMediaStyle medium_750px_50_display_size_"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/medium_750px_50_display_size_/public/article-image/4x5_carousel_04_outstanding.jpg?itok=V0oD7UFC" width="750" height="938" alt="Shloka Dhar posing next to the framework of her thesis project."> </div> <p><strong>At the top of the page: </strong>Shloka Dhar smiles in front of her thesis project, which is titled M玫aj.&nbsp;<strong>Above:</strong>&nbsp;Before completion, Dhar&nbsp;poses next to her project's metal&nbsp;framework, which reflects the &nbsp;topography of the Himalayas in Kashmir, her family homeland.</p></div></div> </div><p>What changed, Dhar told fellow honors graduates last week, was that she realized her interests were broader than medicine. Dhar has worked in a lab studying muscle stem cell regeneration in mice. Although that was exciting work, Dhar said, she felt she was not doing justice to who she is as a person.</p><p>鈥淔or as long as I have remembered, I have always loved biology, and I have always loved art,鈥 she said. 鈥淭he rest of the world thought art and science are di铿erent career paths, and for a moment, I believed them.鈥</p><p>鈥淏ut I did not want to settle for one or the other, because I truly believe that they are intertwined,鈥 she continued. Her honors thesis in sculpture thus combined the two, exploring ideas of genetic memory, preservation, loss, physical displacement and genocide.</p><p>Dhar was born in Bokaro Steel City in India, an industrial center, but her roots are in Kashmir, the disputed war-ravaged territory at the northern juncture of India and Pakistan.</p><p>Kashmir, Dhar notes, 鈥渋s a war zone that I have never been able to visit, and now I am a citizen of a country that I feel does not want me. I do not belong where I am now, stuck in a liminal space. My art documents my explorations through this in-betweenness, of expeditions through my personal identity and out into my interactions with the physical world.鈥</p><p>Dhar鈥檚 mother fled the Kashmiri Pandit Genocide of 1990, which was conducted by Islamic extremists, she notes in her thesis. Legally, Dhar is an Indian immigrant who has American citizenship. 鈥淗owever, I really consider myself a displaced Kashmiri.鈥</p><p>Dhar reflects that her identity is constructed of many parts, 鈥渕any of which seem to clash.鈥</p><p>鈥淭he identity I grew up with is disintegrating, and in the midst of attempting to reconstruct it, I ask myself, 鈥楬ow can I be a Kashmiri when there is no more Kashmir?鈥欌</p><p>Her thesis project, titled M玫aj, is 鈥渁 continuing discourse about my experiences of physical and psychological displacement, genetic memory, a reclamation of the land, and reconnection with my ancestors,鈥 she writes.</p><p>M玫aj is a sculpture constructed of more than 550 feet of steel and traditional Indian fabric. It reflects the Himalayan topography of Kashmir, and it 鈥渆mbodies the heaviness of these ideas,鈥 she states.</p><p>Through her art, she says, 鈥淚 can visually understand the nature and extent of the psychological pain and intergenerational trauma present in my body. It is given a physical form that persistently highlights the beauty of my culture so that I am able to acknowledge the pain.鈥</p><div class="feature-layout-callout feature-layout-callout-xlarge"> <div class="ucb-callout-content"><p> </p><blockquote> <p><i class="fa-solid fa-quote-left ucb-icon-color-gold fa-3x fa-pull-left">&nbsp;</i> </p><p><strong>My art is my most successful method of communication, and the most important message I want to communicate is that I am here. I persist not only despite my cultural history, but because of it.</strong></p><p> </p></blockquote> </div> </div><p>鈥淏oth pain and beauty must be present so that neither is gone unappreciated. My art is my most successful method of communication, and the most important message I want to communicate is that I am here. I persist not only despite my cultural history, but because of it.鈥</p><p>Yumi Janairo Roth, a professor in sculpture and post-studio practice who was Dhar鈥檚 thesis advisor, says that she and fellow faculty member Richard Saxton are "incredibly proud of Shloka.鈥</p><p>Roth adds: 鈥淢玫aj is a remarkable work that, in many ways, is semesters in the making, bringing together issues related to the Kashmiri diaspora, identity, epigenetic memory and community that Shloka has been exploring for a while. We're excited for what the future holds for her.鈥</p><hr><p>&nbsp;</p></div> </div> </div> </div> </div> <div>Shloka Dhar, who majored in art practices and molecular, cellular and developmental biology, is the College of Arts and Sciences鈥 outstanding graduate for fall 2022.</div> <h2> <div class="paragraph paragraph--type--ucb-related-articles-block paragraph--view-mode--default"> <div>Related Articles</div> </div> </h2> <div>Traditional</div> <div>0</div> <div> <div class="imageMediaStyle large_image_style"> <img loading="lazy" src="/asmagazine/sites/default/files/styles/large_image_style/public/feature-title-image/16x9_twitter-linkedin_outstanding.jpg?itok=s7VELx5i" width="1500" height="844" alt> </div> </div> <div>On</div> <div>White</div> Wed, 21 Dec 2022 18:25:30 +0000 Anonymous 5498 at /asmagazine